Bioinformatics: Sequence Alignment and Markov Models
Table of Contents

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Chapter 1. Preliminaries
Part 1: Sequence Alignment and Representation
Chapter 2. Alignment of a Pair of Sequences
Chapter 3. Sequence Representation and String Algorithms
Chapter 4. Multiple-Sequence Alignment
Part 2: Probability Models
Chapter 5. Hidden Markov Models and Applications
Chapter 6. Gene Finding, Protein Secondary Structure
Part 3: Measurement Techniques
Chapter 7. Biochips
Chapter 8. Electrophoretic Techniques and Finite Speed of Diffusion
Appendix A. Internet Hotlinks to Public-Domain Databases
Appendix B. PERL for Bioinformaticists